Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs2364726 | chr2:178136647 | T/C | 1.03E-5 | 211 | 11.43 | 14.1 | 16.43 | KM Plot |
| KIRP | rs2380127 | chr17:80694140 | G/T | 3.74E-5 | 206 | 15.33 | 17.2 | 15.15 | KM Plot |
| KIRP | rs2384973 | chr16:653739 | T/C | 6.6E-5 | 212 | 16.73 | 14.87 | 6.57 | KM Plot |
| KIRP | rs2384976 | chr16:651113 | T/C | 6.6E-5 | 213 | 16.73 | 14.7 | 6.57 | KM Plot |
| KIRP | rs2390677 | chr1:89475842 | A/G | 0.000225 | 214 | 19.5 | 13.52 | 10.23 | KM Plot |
| KIRP | rs2390679 | chr1:89522020 | A/C | 9.07E-5 | 203 | 16.97 | 19 | 9.77 | KM Plot |
| KIRP | rs2391404 | chr1:95284556 | C/T | 4.05E-6 | 213 | 12.3 | 15.9 | 16.47 | KM Plot |
| KIRP | rs2394918 | chr10:74882967 | A/T | 5.34E-12 | 213 | 16.73 | 11.77 | 5.6 | KM Plot |
| KIRP | rs2405880 | chr5:79953793 | A/C | 0.000105 | 212 | 18.65 | 14.87 | 9.77 | KM Plot |
| KIRP | rs2414544 | chr15:58461006 | A/G | 1.71E-5 | 214 | 11.7 | 20.73 | 14.85 | KM Plot |
| KIRP | rs2414545 | chr15:58461270 | A/G | 1.47E-5 | 213 | 16.43 | 16.67 | 11.7 | KM Plot |
| KIRP | rs2428188 | chr6:110797214 | C/G | 7.96E-8 | 208 | 6.7 | 13.17 | 18.47 | KM Plot |
| KIRP | rs2448092 | chr10:26954790 | T/C | 5.58E-5 | 212 | 17.12 | 14.1 | 14.53 | KM Plot |
| KIRP | rs2448093 | chr10:26954280 | T/A | 6.82E-5 | 213 | 17.12 | 14.1 | 15.5 | KM Plot |
| KIRP | rs2477274 | chr10:26952023 | T/G | 6.82E-5 | 213 | 17.12 | 14.1 | 15.5 | KM Plot |